PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_kg.6_#_93_#_4895_0_CBOZ6187.b1_CBOZ_CBPA

Common Name

COCSUDRAFT_32970

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 218aa MW: 24697.8 Da PI: 5.3721

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_kg.6_#_93_#_4895_0_CBOZ6187.b1_CBOZ_CBPA	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4.1e-07	146	206	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +el+r++r+ NRe+Arr R++ + e+ee ++ v++L ++ L++ +l + + l++ fgenesh1_kg.6_#_93_#_4895_0_CBOZ6187.b1_CBOZ_CBPA 146 EELRRQKRRKINRESARRMRLKPRTEVEEQKTLVQVLLGQLALLQDAHRRLLDDYNLLRQ 205 799**********************************99988888777777777766666 PP H CS bZIP_1 62 e 62 + fgenesh1_kg.6_#_93_#_4895_0_CBOZ6187.b1_CBOZ_CBPA 206 Q 206 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.5E-5	144	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAGMPGMPNM LLFENFLDQP EPLFGSEQHI RVGQLHHPGL QDNCAPCELP IAMQPDVNKS 60 GCDYPAGRFG AEEILWLQSA RQESSCADMD STHTQNMERT GFDLSTNIGG GCDHSLHSEI 120 TRCQTALECS ANSEEGKREE PEMTAEELRR QKRRKINRES ARRMRLKPRT EVEEQKTLVQ 180 VLLGQLALLQ DAHRRLLDDY NLLRQQVYNI SEPLPRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	154	LRRQKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648635.1	1e-161	hypothetical protein COCSUDRAFT_32970
TrEMBL	I0Z0C2	1e-160	I0Z0C2_COCSC; Uncharacterized protein
STRING	XP_005648635.1	1e-161	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17042089

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]