PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.2_#_177
Common NameCOCSUDRAFT_39565
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 357aa    MW: 39729.5 Da    PI: 6.1493
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.2_#_177genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.3e-1114541055
                  AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         k+++rW+A+I+        k+++lg f+ +e+Aa a++ a++k++g
  fgenesh1_pg.2_#_177 14 KRTQRWEAHIWQE-----GKQIYLGGFDAEEQAALAYDLAALKFRG 54
                         89********994.....4*************************98 PP
2AP234.84.1e-1197140148
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaia 48 
                          s+++GV+++  +g+W+A+I   +   g +k+ +lg f t+ eAa+a+++
  fgenesh1_pg.2_#_177  97 SQFRGVTRHQ-KGKWEARIGQmV---G-KKYKYLGLFATELEAAQAYDR 140
                          789****999.7******99977...2.5**********99******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.013162IPR001471AP2/ERF domain
SMARTSM003805.4E-191168IPR001471AP2/ERF domain
PfamPF008477.5E-71454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-131562IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-141564IPR016177DNA-binding domain
SuperFamilySSF541713.66E-1497157IPR016177DNA-binding domain
CDDcd000189.35E-1897157No hitNo description
Gene3DG3DSA:3.30.730.102.1E-1398156IPR001471AP2/ERF domain
PROSITE profilePS5103214.01298155IPR001471AP2/ERF domain
PfamPF008477.4E-698140IPR001471AP2/ERF domain
SMARTSM003803.9E-2298161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAEETLQRKN RALKRTQRWE AHIWQEGKQI YLGGFDAEEQ AALAYDLAAL KFRGPDAQIN  60
FDISNYEQEL LHFNDVTKEE VVQNLRRQSK GYQKTSSQFR GVTRHQKGKW EARIGQMVGK  120
KYKYLGLFAT ELEAAQAYDR ESVLRKGIDA VTNFDLSEYS ALLSPAEQEL AIQRGIIPAA  180
SFATQTQLNP QAEHPPHPDS ALLFSSSRPP LSPQLRAGAD LQQVPLYEQH AQLQGYSNMP  240
ALHAGAEQPH SMPPCALAVH SSKGMPRQIT PKSIFEWQPQ SGTASPTTPN IGLLQQQLDD  300
PGFKDSGPDS LEERMQHLAE GAFDLSSGAG AVQPPHTGHH LAMLFEDWTY DHLEPL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651024.10.0AP2-domain-containing protein
TrEMBLI0Z7610.0I0Z761_COCSC; AP2-domain-containing protein
STRINGXP_005651024.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-52AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]