PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.4_#_114

Common Name

COCSUDRAFT_40465

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

NF-YC

Protein Properties

Length: 254aa MW: 27446 Da PI: 7.0686

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.4_#_114	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40	8.5e-13	104	175	13	84
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +++ + +Pl+ ik+i+ d+dv++is + ++ka el++ l r+ +a + kr+t+k d++ av fgenesh1_pg.4_#_114 104 QQNTNPFGFPLSLIKRIMCLDPDVTRISGDGLKAVAKAAELMVEILGSRAAKEALSHKRKTIKLGDVERAVR 175 445555679************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00398	3.9E-11	2	79	IPR009071	High mobility group box domain
PROSITE profile	PS50118	13.587	3	65	IPR009071	High mobility group box domain
SuperFamily	SSF47095	8.12E-12	3	66	IPR009071	High mobility group box domain
Pfam	PF00505	5.0E-13	4	68	IPR009071	High mobility group box domain
CDD	cd01390	1.17E-11	4	65	No hit	No description
Gene3D	G3DSA:1.10.30.10	8.0E-13	4	59	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.20.10	2.1E-15	60	175	IPR009072	Histone-fold
SuperFamily	SSF47113	7.45E-17	98	175	IPR009072	Histone-fold
Pfam	PF00808	1.1E-11	112	174	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAAKRAPTAF FIFSEEQREA TRAECQAQAE PRVKVSVGAV AKAIGEKWRA LTDEEKASYK 60 EKVAERAKAL ASAAADSAPA AGEQGEGEDH VGEEQERDHH ADAQQNTNPF GFPLSLIKRI 120 MCLDPDVTRI SGDGLKAVAK AAELMVEILG SRAAKEALSH KRKTIKLGDV ERAVRMDRRL 180 VEIGLKEVLA EDMFREAGGK GPLKEAGNRG NVGRDEVMEG DAPQAANEAK AAGSKKRAKE 240 DDKVRHITDF FAR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649677.1	0.0	hypothetical protein COCSUDRAFT_40465
TrEMBL	I0Z3B4	1e-180	I0Z3B4_COCSC; Uncharacterized protein
STRING	XP_005649677.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50490.1	2e-08	nuclear factor Y, subunit C5

Link Out ? help Back to Top
Entrez Gene	17043136

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]