PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.4_#_155
Common NameCOCSUDRAFT_40506
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ERF
Protein Properties Length: 641aa    MW: 67433.5 Da    PI: 8.6523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.4_#_155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.7e-12300347255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y GV+   k+grW Ae+ +   +   k+++lg f+ +eeAa a+++a+++l+g
  fgenesh1_pg.4_#_155 300 EYVGVT-PFKNGRWKAECSH---G--GKKHHLGIFDKPEEAATAYDQAALYLKG 347
                          699999.5559******655...2..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-15299355IPR016177DNA-binding domain
CDDcd000181.35E-13299355No hitNo description
Gene3DG3DSA:3.30.730.106.7E-15300356IPR001471AP2/ERF domain
PROSITE profilePS5103213.735300355IPR001471AP2/ERF domain
SMARTSM003803.8E-14300361IPR001471AP2/ERF domain
PfamPF008474.6E-6301347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MNTATDTLHL ATQGTSADDF LRYTGVDLAT AIECLRAGCV ETPAHFAAYM RQGRGHSAEG  60
PAFLHGKEAG LRASDRRAPF RSHAGASFDG HSGTSYLMPS LSSSPGGKTD AHKLALGALQ  120
TGQAQQPSTF SMEAENTNSE ETPKTQAMHF TPARSCAPDK STGTPNLRDY IPSDLPEPDP  180
EQQEDEEEAE YTSSQPQPVK AEQCDLDKEA ALLLSLSDSI SGGQNASQEG SRRAHQLPNM  240
PVFPEGALST PEQRVVPVPS DDKDVVNNTV GNDQRSSPEE QAAANRRSEA LKPPGQGKSE  300
YVGVTPFKNG RWKAECSHGG KKHHLGIFDK PEEAATAYDQ AALYLKGPRA RLNFAKPYGE  360
VPIDTLGGPV LKTGREGTAP ETGTKPAAAA YRKCKAEEAA FTPVPADERY SARAERVAKR  420
IARPRTSADI IMPAAAAQAP RAVGTGAGMV TSGALGRPVP NRPAQSKQII GAPVPVSPIE  480
SYRAVAIDLL GKYEEKAGKG AGAAETGRRK ARGKANAPET GMPAERACRK RKGSDREDAV  540
ICAMMSMPVE QQGAARAERA AKRSARTRTL ASADIPMPDP VPLAPCATET GAGLMTSGAL  600
GMPVIPASPI ASSPEASPAT CLPSARSRNR RKSAPKRSPS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649724.10.0hypothetical protein COCSUDRAFT_40506
TrEMBLI0Z3G10.0I0Z3G1_COCSC; Uncharacterized protein
STRINGXP_005649724.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-09ERF family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]