PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.4_#_260

Common Name

COCSUDRAFT_40611

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 380aa MW: 41474.3 Da PI: 7.074

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.4_#_260	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	56	94	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eEd+l+++a ++ +W+ Ia++++ gR+ ++ ++ + fgenesh1_pg.4_#_260 56 PEEDDLILQARELNK--SWAEIASMLP-GRSSTAIRKHYTNT 94 79******99987..6*****.*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.278	50	99	IPR017930	Myb domain
SMART	SM00717	7.3E-7	50	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-8	53	109	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-9	54	98	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-7	56	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-7	56	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MIASGATVQR VSILDSRLFV PKRQTVQEAQ VPASRITDTH VPRPQVLPAT GTSYLPEEDD 60 LILQARELNK SWAEIASMLP GRSSTAIRKH YTNTLRPKPT PAPRQRAEDA WEDNGRQSSP 120 GPSAGPPGRA ATPQSSKKRP PADTSRLASL ERSIDSRAAA RASSAAPEKQ AGNGGADKGH 180 VGVVEVDGRC TDRTGGDARV KLLQPFKQPP PGNTVQEAHK LPSLQGVRFY QAVTVQDPDD 240 GQKEYSLDLA DTAHGACFNI GMGPDGSPLI SWSDLHALYE LPDGTKWAEH GFFHDVEDME 300 ELARDKGRAS VSLAAKGAEK QELFRKAGRY HSRLQNIEYE CWVFKGSLPS QEELAAKDLE 360 PTDAYFWRIT FHPKTLETL*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MIASGATVQR VSILDSRLFV PKRQTVQEAQ VPASRITDTH VPRPQVLPAT GTSYLPEEDD  60
LILQARELNK SWAEIASMLP GRSSTAIRKH YTNTLRPKPT PAPRQRAEDA WEDNGRQSSP  120
GPSAGPPGRA ATPQSSKKRP PADTSRLASL ERSIDSRAAA RASSAAPEKQ AGNGGADKGH  180
VGVVEVDGRC TDRTGGDARV KLLQPFKQPP PGNTVQEAHK LPSLQGVRFY QAVTVQDPDD  240
GQKEYSLDLA DTAHGACFNI GMGPDGSPLI SWSDLHALYE LPDGTKWAEH GFFHDVEDME  300
ELARDKGRAS VSLAAKGAEK QELFRKAGRY HSRLQNIEYE CWVFKGSLPS QEELAAKDLE  360
PTDAYFWRIT FHPKTLETL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649878.1	0.0	hypothetical protein COCSUDRAFT_40611
TrEMBL	I0Z3W5	0.0	I0Z3W5_COCSC; Uncharacterized protein
STRING	XP_005649878.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17043336

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]