PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_03.0001000152
Common NameOT_ostta03g02140
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 151aa    MW: 16686 Da    PI: 10.0075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_03.0001000152genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-0963111147
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
                  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                                      r r+T+ E e l+++v+++G g+W+ I       + Rt+ ++k++w+++
  fgenesh1_pg.C_Chr_03.0001000152  63 RERFTKAEAEDLIKGVELYGLGQWAQIKLAYFrsTQRTGVDLKDKWRNL 111
                                      78*************************755555*9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.07958116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-1262112IPR009057Homeodomain-like
SMARTSM007172.3E-762114IPR001005SANT/Myb domain
PfamPF002496.5E-763111IPR001005SANT/Myb domain
SuperFamilySSF466894.41E-1365123IPR009057Homeodomain-like
CDDcd116602.00E-2165112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDRTSALLSD YGIGDGSEVV LLLNHEAGPV PVPPTAVNHG FPGEPVAKKA KKDKKEGQSD  60
KKRERFTKAE AEDLIKGVEL YGLGQWAQIK LAYFRSTQRT GVDLKDKWRN LVTASQRPPG  120
FKFRVEYLND PAFLGHVAKV NTDALSKHRE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838480.11e-108Ubiquitin supergroup
TrEMBLA0A090M4P11e-106A0A090M4P1_OSTTA; Ubiquitin supergroup
TrEMBLA0A1Y5I2S91e-107A0A1Y5I2S9_OSTTA; Uncharacterized protein
STRINGA0A090M4P11e-107(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP736355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.27e-12TRF-like 3
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]