PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_06.0001000137
Common NameOT_ostta06g01950
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 178aa    MW: 20038.4 Da    PI: 6.2475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_06.0001000137genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08106144240
                                      SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHH CS
                  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqc 40 
                                      g W+++E +++v++ +++G g  W + a++++ gR ++qc
  fgenesh1_pg.C_Chr_06.0001000137 106 GDWSEDEIKQFVKVATKYGAGdKWGLFASHIP-GRVGYQC 144
                                      78******************************.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-895151IPR009057Homeodomain-like
PROSITE profilePS500907.584100152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-7102153IPR009057Homeodomain-like
PfamPF002493.5E-6106144IPR001005SANT/Myb domain
CDDcd001672.71E-4108144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEIGEDDQIV DGEEGLEHHL TCDEYCERLG IEPGPKMTSF TGWVEESVRE RLGIASSANE  60
AWERNGGGKW SRPAKGQAKD HAKKMLYKNP NAYFYRHTAG EEQINGDWSE DEIKQFVKVA  120
TKYGAGDKWG LFASHIPGRV GYQCSAAYRH IMLPRGLLRD DAWRMTMSGE AVWIGKR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839212.11e-132WD40/YVTN repeat-like-containing domain
TrEMBLA0A090M2671e-130A0A090M267_OSTTA; WD40/YVTN repeat-like-containing domain
STRINGA0A090M2671e-131(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP463677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-07myb domain protein 3r-5
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]