PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_07.0001000042
Common NameOT_ostta07g00720
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family GATA
Protein Properties Length: 202aa    MW: 21199.4 Da    PI: 7.9041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_07.0001000042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.79.1e-1580112133
                             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                                      C+nC++t+Tp WR+++ g  +LCnaCGly +k+
  fgenesh1_pg.C_Chr_07.0001000042  80 CVNCKSTETPFWRKDKGGGGSLCNACGLYLAKN 112
                                      *****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-1572124No hitNo description
Gene3DG3DSA:3.30.50.101.4E-1973124IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011416.39574130IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-1574125IPR000679Zinc finger, GATA-type
CDDcd002026.01E-1579122No hitNo description
PROSITE patternPS00344080105IPR000679Zinc finger, GATA-type
PfamPF003201.9E-1280112IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MIMAQYAAYA AYARAQTQHV VGFGVPGFGG VGFGGGYPYG VAAYEATSAA RGNGARGRGG  60
EKLGKVRRAK PMKSKVPKVC VNCKSTETPF WRKDKGGGGS LCNACGLYLA KNDAPRPAQL  120
WRRQETSASE IDTNNDTNDS EKTTEGVPSA SVEGEKNSPE KDSESDGGAE TTNEKPSEES  180
PRDERVTENA LKLDVKAGAA E*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839358.11e-144Zinc finger, GATA-type
TrEMBLA0A090M2X51e-143A0A090M2X5_OSTTA; Zinc finger, GATA-type
STRINGA0A090M2X51e-144(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.13e-07GATA family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]