PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_11.0001000193
Common NameOT_ostta11g02490
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 469aa    MW: 52936.8 Da    PI: 10.3135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_11.0001000193genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.3e-263195260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS......TTEEEEEEES--SS-- CS
                             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed......pkvveitYegeHnhek 60
                                     +Dgy+WrKYGqK++kgs++prsYYrCt +gCp++kk e +++d      ++ + +tYeg H+h+k
  fgenesh1_pg.C_Chr_11.0001000193 31 EDGYRWRKYGQKNIKGSRHPRSYYRCTERGCPARKKTELASDDesdedeGDRMRVTYEGVHTHPK 95
                                     8************************************9877652222225789**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.11E-242596IPR003657WRKY domain
PROSITE profilePS5081123.3882596IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-262596IPR003657WRKY domain
SMARTSM007744.9E-313095IPR003657WRKY domain
PfamPF031064.5E-243194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTTSDRSRSS ADAENEAPEE RPTPHNAHAH EDGYRWRKYG QKNIKGSRHP RSYYRCTERG  60
CPARKKTELA SDDESDEDEG DRMRVTYEGV HTHPKPSRGR GPSMLMSMEP LCIAATPERA  120
TSGTSSGTVF GRRRGREEGQ TEREKRKFHE FSIKSESLET PKKRRKESPA AKTTPRSRTT  180
PQSKTPPRQT PSRPNRSRAS GSRSRQRERR ESSCSAQNAG RSSSYRAKKP MKQPVNPTLM  240
SDMMTCFNEY VTNSEQWTAN GHIGGHVAPF KSSALEYEHH RRPVVPPPPQ ERSLSDRLFD  300
WLPLSPLSPT WPSWPFGDAD LEAKLLRSTP ARENQAVEYN HDHRGNVCSS GLRRERSFED  360
LRPPALTVAD EPTALTHDER RPDWSLGEYL RSPFESIISS TPLLATLTKT MRSWCESPSA  420
AAQALSPLGQ GRDFARPPGF VARRRARSET LHPDSLYTAS LRSPFRAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-1531961574WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144165KRKFHEFSIKSESLETPKKRRK
2160166PKKRRKE
3161165KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839972.10.0DNA-binding WRKY
TrEMBLA0A090N4D70.0A0A090N4D7_OSTTA; DNA-binding WRKY
STRINGA0A090N4D70.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-18WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]