PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_12.0001000110
Common NameOT_ostta12g01620
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 256aa    MW: 28608 Da    PI: 7.8024
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_12.0001000110genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.84.8e-1086111126
                                      --S---SGGGGTS--TTTTT-SS-SS CS
                          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                      yk  +C+++ +tG+C  Gd CkF H+
  fgenesh1_pg.C_Chr_12.0001000110  86 YKPDICKDYKQTGFCGWGDACKFLHD 111
                                      899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-983117IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-685112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.67185113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-1386117IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-786111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-10149222IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.05E-11162207No hitNo description
CDDcd001628.43E-5163207No hitNo description
PROSITE profilePS5008910.04163203IPR001841Zinc finger, RING-type
SMARTSM001842.3E-4163203IPR001841Zinc finger, RING-type
PROSITE patternPS005180181190IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGATAQLEIN TAKEMDGRTM REQVLRQAVE RADGFEDDKK YRGTNAYVDY RAGFRREQTI  60
ASEKGRGAHG PMRAATNVRS TFVMDYKPDI CKDYKQTGFC GWGDACKFLH DRGDYKQGWQ  120
LDRDWELKEK ARKAAEAKMA ALGEDGAADN SEEELENDLP ESCSICNTPW LDAKFPVATS  180
CGHCFCERCA LQHNAKDTTC FTCGKDTGGT FNAAKDIIKR VKECKATGRA WRERRKSEKR  240
LDDKPASNSA GWVLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-511228114324RING finger protein 113A
5z58_M2e-511228114324RING finger protein 113A
6ff4_t2e-511228114324RING finger protein 113A
6ff7_t2e-511228114324RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082309.20.0Zinc finger, RING/FYVE/PHD-type
SwissprotQ8GX842e-75C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1Y5I0D20.0A0A1Y5I0D2_OSTTA; Uncharacterized protein
STRINGA0A090N4H40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.19e-72C3H family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]