PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

fgenesh1_pg.C_Chr_14.0001000151

Common Name

OT_ostta14g01990

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 261aa MW: 28249.9 Da PI: 4.7626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.C_Chr_14.0001000151	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	101	150	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++++ rE++RRd +Ns+feeL+ +l + ++K +Ka+++ A+ +Ik L fgenesh1_pg.C_Chr_14.0001000151 101 KKTKSTREKKRRDALNSRFEELQAVLEPG---AATKADKATVVAAATVFIKRL 150 7899**********************6...6****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.19E-9	97	153	No hit	No description
SuperFamily	SSF47459	3.53E-11	99	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.097	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-10	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-12	101	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MATTPVDDAI DAALMGSSDW LNEFFSTFDG DVASALLDDV EAFEQPLVGD HEAEVGQVPR 60 GESESGLESK KRKAVDEVEN EVENASVGNG VRTSTLSEGA KKTKSTREKK RRDALNSRFE 120 ELQAVLEPGA ATKADKATVV AAATVFIKRL RAEHARLAEG IMRLQEDNIQ KAKLTKALAI 180 EREALRKEKQ ILLHEKLRIE AQLQGFLANM PFASPADGVR SLASTKGAEV QMPSWTLATT 240 FMIPTTTEGE EDVTLRAPVA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022841354.1	0.0	Myc-type, basic helix-loop-helix (bHLH) domain
TrEMBL	A0A096PAY9	0.0	A0A096PAY9_OSTTA; Myc-type, basic helix-loop-helix (BHLH) domain
STRING	A0A096PAY9	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5460	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	3e-11	bHLH family protein

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]