PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_15.0001000108
Common NameOT_ostta15g01430
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 244aa    MW: 27455.9 Da    PI: 10.0476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_15.0001000108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-112367147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                     rg+W + Ed  l  +  ++G++ W++I ++++ gRt+ q + rw+++
  fgenesh1_pg.C_Chr_15.0001000108 23 RGAWDAAEDACLRALYDEYGPK-WSLICQRVP-GRTAQQSRARWFQL 67
                                     89******************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-19168IPR009057Homeodomain-like
PROSITE profilePS500904.797117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-5321IPR009057Homeodomain-like
PROSITE profilePS5129416.8811881IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-142266IPR009057Homeodomain-like
SMARTSM007172.5E-82270IPR001005SANT/Myb domain
PfamPF002491.0E-102367IPR001005SANT/Myb domain
CDDcd001673.94E-72567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGRTDQQCM GRWRRHLDPD VTRGAWDAAE DACLRALYDE YGPKWSLICQ RVPGRTAQQS  60
RARWFQLEGG TGEHRYVQRE RKIKDQTYDE YEKLEERKMA TLSPAPLEMG QPFRKILEDV  120
DARSEIRHFG LSKGSTLASA LERRHPRPAT TAMDSVSLWR DVGETLAKRG TLASQVNRKR  180
LRDSEEVRKR QPVVHERLEI PQVDRRLRTS TSVEEDKLSV LLGVALGGRR SSGGGDGSGS  240
GAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226234GGRRSSGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022841154.11e-177SANT/Myb domain
TrEMBLA0A096P9Z41e-175A0A096P9Z4_OSTTA; SANT/Myb domain
TrEMBLA0A1Y5IHZ41e-163A0A1Y5IHZ4_OSTTA; Serine/threonine protein kinase
STRINGA0A096P9Z41e-176(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-15Homeodomain-like protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]