PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_16.0001000191
Common NameOT_ostta16g02650
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 264aa    MW: 27179 Da    PI: 9.1053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_16.0001000191genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06223241625
                                      -SGGGGTS--TTTTT-SS-S CS
                          zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                      C ff+r G C+ Gd Ck++H
  fgenesh1_pg.C_Chr_16.0001000191 223 CIFFQR-GSCRAGDACKYSH 241
                                      ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.056217244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5219241IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5223241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMDDDAQHAN GPVNHGNKRD RSGGRGGRGG RGGRDGRRRE GGNGGPNERR RERAPTRPGW  60
YPTGTIDEVS GRPAHSGQCE GCRVSTVVNF RPVVGGNPPL CGVCLDSLKA ATAGSSMEGD  120
ASGGPNRNRR QGGGRGYGNG AMHGMQMPYP FMPGARFSPY GAAGGQMVMV DPRMMAAYGG  180
GGGMGAMTMP PFGGGGRGKN RTWSRDGTDG AEVPDVDTSG IQCIFFQRGS CRAGDACKYS  240
HAGEGAGTAT TDVSAGTEMQ MNE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840395.10.0Zinc finger, CCCH-type
TrEMBLA0A096P8780.0A0A096P878_OSTTA; Zinc finger, CCCH-type
STRINGA0A096P8780.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP647955
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]