PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

fgenesh1_pg.C_Chr_18.0001000131

Common Name

OT_ostta18g01760

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 233aa MW: 26779.6 Da PI: 12.1903

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.C_Chr_18.0001000131	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30	8.6e-10	44	89	12	57
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 le+L ++e +r p+a++r++LA+++g e+ V WF rRa k+ fgenesh1_pg.C_Chr_18.0001000131 44 LEVLRGVYELERRPDAATRRRLARQIGAREEAVNAWFRSRRAEGKR 89 899***************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0045	28	94	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.855	30	90	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-9	42	93	IPR009057	Homeodomain-like
CDD	cd00086	7.01E-4	44	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-9	44	92	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-7	44	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDSIARADDG PTRRRRDAPS TDATEDYMTR ARRLQSAGVD ERGLEVLRGV YELERRPDAA 60 TRRRLARQIG AREEAVNAWF RSRRAEGKRR RARRALCVVA LLVLAAGGVF LAIHVARQTA 120 FARRRMQTLG RRYKWLTRSG LPRPYASGRN RAVARKPLTY ERERVINAAG KEEVRQVIYT 180 KDNPKASPIT RTTEETPRQK LERLRYDAAK RSNKGRIKGR SRNRNRVRQS NT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003084219.2	1e-156	Homeobox domain
TrEMBL	A0A096PA34	1e-155	A0A096PA34_OSTTA; Homeobox domain
STRING	A0A096PA34	1e-156	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9294	5	5

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]