PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.chr_14_#_72
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 494aa    MW: 53811.7 Da    PI: 10.9326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.chr_14_#_72genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07272324348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                              +W+  E + lv++v+ +G g+W+ I +           +R++ ++k++w+++l
  fgenesh1_pg.chr_14_#_72 272 PWSLPEVKALVRGVTHYGRGQWADIKALRRdgvaddlINRSAVDLKDKWRNLL 324
                              8*******************9999999988899998889************96 PP
2Myb_DNA-binding26.61.4e-08400449248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +WT eE   lvd+v + Gg +W+ I ++     ++Rt+ ++k++w+++l
  fgenesh1_pg.chr_14_#_72 400 SPWTMEEAMALVDGVDRCGGCRWTIIKKCDDpvlERRTAMDLKDKWRNLL 449
                              58***************************9999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-11264325IPR009057Homeodomain-like
PROSITE profilePS5129410.534265328IPR017930Myb domain
SuperFamilySSF466891.79E-12268326IPR009057Homeodomain-like
SMARTSM007171.7E-5269326IPR001005SANT/Myb domain
CDDcd116603.53E-17271325No hitNo description
PfamPF002496.1E-6272324IPR001005SANT/Myb domain
PROSITE profilePS5129411.652394453IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-11395450IPR009057Homeodomain-like
SMARTSM007171.3E-4398451IPR001005SANT/Myb domain
CDDcd116603.12E-18401449No hitNo description
SuperFamilySSF466899.33E-15401475IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MARERAAAET ETTAETTAAA AAHASGVGGF GMAVPAPHAY SMMAAFGPKV HELRRQAAMT  60
RGHATTERAP PMLMFPPVPF NPMTMTMVPP PTVMMPQETA VKVNARHSPS GSDGSHHTTH  120
GADESVERGQ EAACSSGRGQ ASMIAMMMPP PLVLPLSLKN ARLEALQVPD RTQTPGIRSP  180
FSAANVLVGM MANGSDKENE RSLGQPSRVR GKRGEYLGPL SVKCPKKRRT TKNSRARSNL  240
KTFDALPAEA PNVAARPLLK STASNKPKTH RPWSLPEVKA LVRGVTHYGR GQWADIKALR  300
RDGVADDLIN RSAVDLKDKW RNLLRVAMLP GLYKRRDVNG VPSELLEQVR VLASKSITAP  360
PRRSKDNGVH DQAENAADAD VKTEKGLATS KGARRSKHHS PWTMEEAMAL VDGVDRCGGC  420
RWTIIKKCDD PVLERRTAMD LKDKWRNLLQ LASLPAQSRR KQETSPEFLQ RVLDLEAQYG  480
GARRKGRKTN SKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421395.10.0predicted protein
TrEMBLA4S7540.0A4S754_OSTLU; Uncharacterized protein
STRINGABO996880.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-14TRF-like 3