PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

fgenesh1_pg.chr_5_#_192

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 164aa MW: 17414 Da PI: 10.8181

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.chr_5_#_192	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	24.6	7.5e-08	82	120	122	160
YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 r P+a+n f+k e+ r++a+ P + +e f+ a W fgenesh1_pg.chr_5_#_192 82 APRQPTAFNLFMKAEVVRVRAEKPGLGPKEVFTECAARW 120 3489******************************99999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	6.94E-8	69	122	IPR009071	High mobility group box domain
Pfam	PF04690	1.1E-6	73	121	IPR006780	YABBY protein
Gene3D	G3DSA:1.10.30.10	6.4E-6	83	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGSSDSDSDD RTGRSRDAAS DARALAEALA PCFASLADAC LRAHEAVCAI ADVAPTTTLT 60 RKRGTGADGK KLTKKQKREL RAPRQPTAFN LFMKAEVVRV RAEKPGLGPK EVFTECAARW 120 KAKKAAMGGA GGSLAGASTP VPVKEKKARK EKSHKKDKKH RDQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001418036.1	8e-33	predicted protein
TrEMBL	A4RXQ9	2e-31	A4RXQ9_OSTLU; Uncharacterized protein
STRING	ABO96329	3e-32	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9255	4	5