PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.4_#_96
Common NameCOCSUDRAFT_35694
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB
Protein Properties Length: 116aa    MW: 13301.9 Da    PI: 10.5729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.4_#_96genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-172368148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        r +WT+eEde+l+++v  +G+  W+ I+r +  gRt+ qc  rw+ +l
  fgenesh1_pm.4_#_96 23 REKWTEEEDERLLELVGVHGNA-WAEISRQLE-GRTDQQCMGRWRRHL 68
                        789*******************.*********.************986 PP
2Myb_DNA-binding39.11.7e-1274115144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         r +W + Ed  l+ +++++G++ W++Ia+ +  gRt+ qc+ rw
  fgenesh1_pm.4_#_96  74 RVSWAAPEDAALASLHARHGSH-WSAIAKSID-GRTAQQCRARW 115
                         6789999***************.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-10128IPR009057Homeodomain-like
PROSITE profilePS512947.706117IPR017930Myb domain
PROSITE profilePS5129428.2541872IPR017930Myb domain
SuperFamilySSF466891.83E-2620115IPR009057Homeodomain-like
SMARTSM007175.3E-162270IPR001005SANT/Myb domain
PfamPF139212.9E-172682No hitNo description
Gene3DG3DSA:1.10.10.601.5E-202970IPR009057Homeodomain-like
CDDcd001673.45E-44168No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1671115IPR009057Homeodomain-like
PROSITE profilePS5129414.78673115IPR017930Myb domain
SMARTSM007175.6E-473115IPR001005SANT/Myb domain
CDDcd001671.89E-776115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGSRTGQQCA QRWRHKVNPN IKREKWTEEE DERLLELVGV HGNAWAEISR QLEGRTDQQC  60
MGRWRRHLDP GIKRVSWAAP EDAALASLHA RHGSHWSAIA KSIDGRTAQQ CRARW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2611155120MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649766.15e-79hypothetical protein COCSUDRAFT_35694
TrEMBLI0Z3K31e-77I0Z3K3_COCSC; Uncharacterized protein
STRINGXP_005649766.12e-78(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-27myb domain protein 3r-5
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]