PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_5_#_12
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 562aa    MW: 62959.2 Da    PI: 6.7424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_5_#_12genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06157178527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                             +C+f+++ G C +G +C+F H+p
  fgenesh1_pm.chr_5_#_12 157 PCQFWRA-GKCERGVNCRFYHDP 178
                             7******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5137511.3561044IPR002885Pentatricopeptide repeat
PfamPF130416.5E-101256IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-51246IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.3664575IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.11779113IPR002885Pentatricopeptide repeat
PfamPF015350.00783109IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-584114IPR002885Pentatricopeptide repeat
PROSITE profilePS5010315.131152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5154177IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4157178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5162525.367293560IPR003358tRNA (guanine-N-7) methyltransferase, Trmb type
PfamPF023907.4E-19360510IPR003358tRNA (guanine-N-7) methyltransferase, Trmb type
SuperFamilySSF533352.08E-7361503IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006400Biological ProcesstRNA modification
GO:0008176Molecular FunctiontRNA (guanine-N7-)-methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MIASEGLVPS PYAYASLLNA YVNTGTMDGA EALMERMREV GCAPNVVAYT TMLKGYMLVA  60
DVDAAWRLID GMTHPVAPDS RAVNTYIRVC VRCGNLRMAR RAFERMRQWD VVPDDTTHKL  120
MGRLLAQGLR CDELKKLIKS VRKGEHVRWT NDPNSGPCQF WRAGKCERGV NCRFYHDPSI  180
AQSDALEKEI ESNDTLASLY VNHAHASAVC GQFEQCAKSL DKAGECLTED GGAGGLRDKD  240
ERAELFRRTN RDELKLEMQR VKAFAERVQK RKQEPPNLES HLSKTLIFSS QILEAPARES  300
KMSSEEVDAL RANLYAALKD TMGLVDSECS VKRAVRKCIA DDGTMRFDRM FGRSKKDKRE  360
VNFEVAAGNG DWAVAQAKAD DSADWISLEL RHDRVYSIFS RAVCSGVSNF AAMGGDAAYV  420
MRRNVAPESV SNVFVNFPEP PHHSGDSAAD NSLALLNAEF FRDIHASLRA KGGLTIFSDN  480
HRYMRSLATT LAELELFEAR EDVDLSSREP AERYETVSGV RLYEGLPGPL TGHRVYEQSY  540
FDRFWENGQH IDRYFITLVK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9d_A3e-132171217387pentatricopeptide repeat protein dPPR-U8A2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417638.10.0predicted protein
TrEMBLA4RWU90.0A4RWU9_OSTLU; Uncharacterized protein
STRINGABO959310.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.25e-08pentatricopeptide (PPR) repeat-containing protein