PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pm.chr_6_#_332

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Nin-like

Protein Properties

Length: 800aa MW: 88504.8 Da PI: 7.9143

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pm.chr_6_#_332	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77	2.2e-24	398	446	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + i+le+l+++F++++k+AA +Lgv+ T+LKriCRqyGI+RWP+R ++s fgenesh1_pm.chr_6_#_332 398 WGITLEVLQQNFHKHLKQAATDLGVGSTTLKRICRQYGIRRWPRRSLNS 446 579*******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.426	383	467	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-20	400	446	IPR003035	RWP-RK domain
PROSITE profile	PS51745	15.705	611	694	IPR000270	PB1 domain
SMART	SM00666	4.3E-5	611	694	IPR000270	PB1 domain
SuperFamily	SSF54277	2.71E-12	611	691	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.6E-11	612	682	No hit	No description
CDD	cd05992	1.78E-10	612	692	No hit	No description
Pfam	PF00564	6.6E-9	612	691	IPR000270	PB1 domain
SuperFamily	SSF54277	3.08E-8	718	789	No hit	No description
SMART	SM00666	0.12	720	797	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.9E-8	721	789	No hit	No description
Pfam	PF00564	6.7E-5	721	793	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MACENVREDT IVNDTSVERL QRQLVKTVEG ISKRLYGDCL LQAWLVEKKN EIVNLYASQD 60 FVRVISKTNT AALRSFQVNA KRFSLNCIIG GQDGFTPGSG VPGRVYATNA PEFTPSVQCY 120 HSTEFGRHAA AVQSGCHSQL LVPCTLRAEC EHPFVIFEIT SLQVLDNIGT LYAEVMREIV 180 NGGLYSRLSS SLAPPSALIN RISDECARLK FDEVTSRLKM FCTKLQVPFA QIWIPCAVDG 240 TLITAGAPYY QSSPHFAHYR NAAMNIAISQ SAGSFAKVWS KGSMIWLHDL STLSHRDFLL 300 KHSCNLLKLN ALCIAKVALM GISSGEPLQV LVEVLLDPSL RAPREQAKTV QMFWSQVESE 360 LNAKVITDTG TTWLRQMKNS QTASGGLAEP NSTGVALWGI TLEVLQQNFH KHLKQAATDL 420 GVGSTTLKRI CRQYGIRRWP RRSLNSKNGR MSDILAKSNK QTSSNQMSLA TGGDQEDNDT 480 CSLSYISQKL CASEHTVLDG DGPLMETNKR TLEERVHRGA NLGAFWQEGS DLKMQRGMSW 540 HGNTDAKDAL EQEVSHRFER SVHGSQNFAR SAPRMDESVR GANAFNPATF KVNDEMTSFI 600 NELVQEPSCV PVVVKVQIQD ALIRIRLVTT SKYTELIEAL SGILIPNLKA CKLKYKDDED 660 DWCLLRNEED LDECLACASR TGSPHTVRIK LTFDKATKAD KVFKREQSCR KGLVQESSQI 720 ISVKASFGED VFRFKITPEM TLGDIISKVP SGTSKSLSLS FQDADDDWIR LGGSADLAEM 780 RNVADASGSL RIRFTSTNA*

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MACENVREDT IVNDTSVERL QRQLVKTVEG ISKRLYGDCL LQAWLVEKKN EIVNLYASQD  60
FVRVISKTNT AALRSFQVNA KRFSLNCIIG GQDGFTPGSG VPGRVYATNA PEFTPSVQCY  120
HSTEFGRHAA AVQSGCHSQL LVPCTLRAEC EHPFVIFEIT SLQVLDNIGT LYAEVMREIV  180
NGGLYSRLSS SLAPPSALIN RISDECARLK FDEVTSRLKM FCTKLQVPFA QIWIPCAVDG  240
TLITAGAPYY QSSPHFAHYR NAAMNIAISQ SAGSFAKVWS KGSMIWLHDL STLSHRDFLL  300
KHSCNLLKLN ALCIAKVALM GISSGEPLQV LVEVLLDPSL RAPREQAKTV QMFWSQVESE  360
LNAKVITDTG TTWLRQMKNS QTASGGLAEP NSTGVALWGI TLEVLQQNFH KHLKQAATDL  420
GVGSTTLKRI CRQYGIRRWP RRSLNSKNGR MSDILAKSNK QTSSNQMSLA TGGDQEDNDT  480
CSLSYISQKL CASEHTVLDG DGPLMETNKR TLEERVHRGA NLGAFWQEGS DLKMQRGMSW  540
HGNTDAKDAL EQEVSHRFER SVHGSQNFAR SAPRMDESVR GANAFNPATF KVNDEMTSFI  600
NELVQEPSCV PVVVKVQIQD ALIRIRLVTT SKYTELIEAL SGILIPNLKA CKLKYKDDED  660
DWCLLRNEED LDECLACASR TGSPHTVRIK LTFDKATKAD KVFKREQSCR KGLVQESSQI  720
ISVKASFGED VFRFKITPEM TLGDIISKVP SGTSKSLSLS FQDADDDWIR LGGSADLAEM  780
RNVADASGSL RIRFTSTNA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001418584.1	0.0	predicted protein
TrEMBL	A4RZJ8	0.0	A4RZJ8_OSTLU; Uncharacterized protein
STRING	ABO96877	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	3e-15	Nin-like family protein