PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_15000122
Common NameCHLNCDRAFT_53437
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family B3
Protein Properties Length: 359aa    MW: 37265.5 Da    PI: 6.1667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_15000122genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-1525115190
                                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT- CS
                               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangL 74 
                                      f+kvlt+sdv+ +grlv+pk+ ae+h   +++++++ ++l+d++g++ ++++++  +++s++y+l+ ++ e   + ++
  fgenesh3_pg.C_scaffold_15000122  25 FEKVLTSSDVNGTGRLVIPKSQAEAHfpFLEQQQGMVMSLTDTEGNQHSFRFRFwvNNQSRMYLLE-NTIEVQAQYKM 101
                                      99**************************777789***********888888887556666667777.999999999** PP

                                      -TT-EEEEEE-SS.SEE CS
                               B3  75 kegDfvvFkldgr.sef 90 
                                       +gD++vF    +  ++
  fgenesh3_pg.C_scaffold_15000122 102 VAGDVLVFA---KlPDG 115
                                      ********8...33555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-2224116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-1924117IPR015300DNA-binding pseudobarrel domain
CDDcd100177.65E-2124109No hitNo description
PfamPF023621.8E-1125110IPR003340B3 DNA binding domain
SMARTSM010192.1E-825123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAGAAKHTNE SARAALQAMG GSILFEKVLT SSDVNGTGRL VIPKSQAEAH FPFLEQQQGM  60
VMSLTDTEGN QHSFRFRFWV NNQSRMYLLE NTIEVQAQYK MVAGDVLVFA KLPDGTYAIC  120
GRKGTKDDVS RKPAVRRSKD DASPGEGKGA KRARARGGGA DSAKHKRARQ KQAAQAIQSM  180
FTYWSGYSLP MRKDGVFRAV PNSAAQEGDK VLAQCGAWSA IVSVGGELFQ AFFDTLDAAN  240
AALEAALQSK AEEAAPTPSG AETPAGAAAG GSAPASRGPS EEPPPAAGGP ALALAPGVPG  300
AAAAEAAASE GAAAGAAPAD GVPQPQQEQQ EQEQQQQQQA REPAVEQAEQ QPVLPLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-212412323122B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846030.10.0hypothetical protein CHLNCDRAFT_53437
TrEMBLE1ZJV80.0E1ZJV8_CHLVA; Uncharacterized protein
STRINGXP_005846030.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-21HSI2-like 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]