PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_2000067
Common NameCHLNCDRAFT_49822
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB
Protein Properties Length: 592aa    MW: 65065.5 Da    PI: 9.6622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_2000067genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-12329371247
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     grW+ eEd +l+++v + G + Wk I   +g  R ++ c++rw+++
  fgenesh3_pg.C_scaffold_2000067 329 GRWSSEEDAQLLQLVSEKGRR-WKEIGGALG--RMPETCRDRWLMV 371
                                     8******************99.********8..**********986 PP
2Myb_DNA-binding22.82.1e-07379472146
                                     TSSS-HHHHHHHHHHHHHTTTT.................................................-HHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................................tWktIart 30 
                                     rgrW ++E e+l +av+ +                                                    +W+ +++ 
  fgenesh3_pg.C_scaffold_2000067 379 RGRWEEDETERLRQAVHDYLAAkvaaegqaggegevtlsmaditgavaepvvdedgaaaftvsrrvvlddiDWSVVSAA 457
                                     89*****************999********************************************************* PP

                                     HTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding  31 mgkgRtlkqcksrwqk 46 
                                     +g +Rt  qc ++w++
  fgenesh3_pg.C_scaffold_2000067 458 VG-TRTNIQCLEKWYS 472
                                     **.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-6246314IPR009057Homeodomain-like
PROSITE profilePS500904.913249314IPR017877Myb-like domain
SMARTSM007170.26253324IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-11302370IPR009057Homeodomain-like
PROSITE profilePS5129413.261323376IPR017930Myb domain
SMARTSM007171.3E-8327374IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-12329384IPR009057Homeodomain-like
CDDcd001675.83E-6330371No hitNo description
PfamPF139218.0E-13331390No hitNo description
PROSITE profilePS500906.899374474IPR017877Myb-like domain
SMARTSM007174.8E-9378476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-7385411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-6447525IPR009057Homeodomain-like
SuperFamilySSF466892.58E-10454537IPR009057Homeodomain-like
PROSITE profilePS500907.317476529IPR017877Myb-like domain
SMARTSM0071727480531IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAADWGASLE RLFAKKGVEE LKTSKAVKKV VKAAAQHSNR SAQELSRQLE EFLRRGDGGF  60
RLAGSKIARA PLPAQKLKKK KEKEKKKKKA KVSGETAAAA DEEHEAPAAG AAAAAAGAGP  120
AKKKRKQQHG AEGSAAAEQQ LEAGTAPAHG EPEQKKKEKK KKRKAGEGPE QQEEPQEQQQ  180
QEQQEEEEPQ SRKKKKRKTQ GDGKGAAAAA AAAPRGWEDE QDGAGVHGVE SGDKERDTAG  240
MPWRQNNSRK KVKSGAFSKA EKDAIKRAVE AYAVANGRST DDYSWLYGSS RRGETKGLWS  300
KIAAALPHRT VKSVWAAGSR LFHEGNYQGR WSSEEDAQLL QLVSEKGRRW KEIGGALGRM  360
PETCRDRWLM VRLGEDRKRG RWEEDETERL RQAVHDYLAA KVAAEGQAGG EGEVTLSMAD  420
ITGAVAEPVV DEDGAAAFTV SRRVVLDDID WSVVSAAVGT RTNIQCLEKW YSQLSPSMVA  480
RGEWGSGDDR RLLRALYLSG AAHDYELDWS SLVRGRTAAQ ARRRWRLMLK VVPDHRDREF  540
EELVEVLVDR YLPQLKERRR QSAGEGDAGE RGSGGQQQEE AEVEVVEDEE G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A4e-1423655177353DNA-binding protein reb1
5eyb_B4e-1423655177353DNA-binding protein reb1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163KKEKKKKRK
2191196RKKKKR
3191197RKKKKRK
4192197KKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851108.10.0hypothetical protein CHLNCDRAFT_49822
TrEMBLE1Z4820.0E1Z482_CHLVA; Uncharacterized protein
STRINGXP_005851108.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-33MYB_related family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]