PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_21000059
Common NameCHLNCDRAFT_54323
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C2H2
Protein Properties Length: 530aa    MW: 56645.8 Da    PI: 8.9202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_21000059genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05336355221
                                      EETTTTEEESSHHHHHHHHH CS
                          zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                       C+dC++ Fs++  L++H  
  fgenesh3_pg.C_scaffold_21000059 336 HCHDCSRDFSTSGALQSHRA 355
                                      6*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.420.104.6E-24123309IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.28E-26131310IPR012337Ribonuclease H-like domain
SMARTSM004741.6E-7132314IPR0025623'-5' exonuclease domain
PfamPF016122.5E-13148309IPR0025623'-5' exonuclease domain
CDDcd061413.00E-39151310No hitNo description
PROSITE profilePS501578.871335359IPR007087Zinc finger, C2H2
PROSITE patternPS000280337359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0003676Molecular Functionnucleic acid binding
GO:0008408Molecular Function3'-5' exonuclease activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLPSEAPCIS GDIACTPSNS SLDSRQPASE LRPPKSAKRR AAEALLHRRY SSSTLAPDGG  60
GGGAKRQRTD QQRPPVRVAA CSDCAACSAD CVGGSSTAAA WCSQDVALPP MDWPAALQSV  120
SLERDVVAAS ACTVVAAEGQ LPAALAALRR SMQDSCVAID LEWKPEGWAG GGPTRVALMQ  180
LASATVAVLV RVCRLGFRMP PSLRAFLSDP DLTFIGFSWD SSDEVKMRQT FGEGRRELFP  240
RFLDLQQVGA SLGYHGFGLA ALTKRVLGFA LPKCRKVTMS NWEARQLSAR QVQYGALDAV  300
VTGHIFRGLR LWHASPSACT ACRQMLGAVL PQPAWHCHDC SRDFSTSGAL QSHRAQKRHR  360
VSPAVCDECG RVHAQRAPEG SSAGALALLT LSRAMVTRTA SPLQVAAIAF ICVGSVSAFE  420
RTDWWYKTCP GGDYAATPDK CATCTCGVRP GLGGADCWQF PNTFCSCFQG KGEKCSSVRR  480
VLEYNDKLGR SVTVKRKLSQ LCPDGFRCRN SATGPWCCPR KAVGKPSRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339PKSAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844778.10.0hypothetical protein CHLNCDRAFT_54323
TrEMBLE1ZNG20.0E1ZNG2_CHLVA; Uncharacterized protein
STRINGXP_005844778.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]