PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_5000145
Common NameCHLNCDRAFT_50978
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 227aa    MW: 26157 Da    PI: 9.4306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_5000145genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-091333425
                                    ---SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                                    elCr+f+r G C++G+ C+F+H
  fgenesh3_pg.C_scaffold_5000145 13 ELCRHFLR-GRCRFGSACRFSH 33
                                    8*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-5935IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0791036IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-61238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-81237IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-61333IPR000571Zinc finger, CCCH-type
SuperFamilySSF562192.75E-1659177IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.108.3E-666164IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033728.5E-1168185IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAEAAYVKHR VPELCRHFLR GRCRFGSACR FSHQREDVAL PFGHRQYVQS QASHAIRGNE  60
GGWRFRVLSY NVLADCLAQE HKELYTSAPR FSLEWSFRSR LIIREILHHS PDIVCLQEVD  120
RFPEFQHALQ PHGYEGVFTK RTGDRSDGLA MFWRINAMQP VDQRFLRFKD LGMKDNVAQL  180
LVFQRRESLL GAGFFLRCSK CGRCWSTSTA CACSSKRGAA DVLLQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bt1_A4e-136518125153Nocturnin
6bt2_A4e-136518125153Nocturnin
6bt2_B4e-136518125153Nocturnin
6mal_A4e-136518124152Nocturnin
6nf0_A4e-136518124152Nocturnin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849544.11e-168hypothetical protein CHLNCDRAFT_50978
TrEMBLE1Z9251e-167E1Z925_CHLVA; Uncharacterized protein
STRINGXP_005849544.11e-167(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP88233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29560.22e-06C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]