PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_9000028
Common NameCHLNCDRAFT_52003
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family NF-YC
Protein Properties Length: 114aa    MW: 11330.8 Da    PI: 4.3441
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_9000028genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.87.4e-16251032299
                           NF-YC  22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivprd 99 
                                      + r+k+++k d ++k is+ea   ++ka elf+  l+ ++  h + + r  +l+ +d+aa+v++++  dfl d+vp+ 
  fgenesh3_pg.C_scaffold_9000028  25 TVNRVKNLVKEDAEIKSISTEACFAVAKATELFLEGLASKAAAHMQAAGRAdSLEYADVAAVVAESEALDFLGDVVPQT 103
                                     578*******************************************9999538***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.9E-2026102IPR009072Histone-fold
PfamPF008085.3E-82774IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.37E-1533103IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDASPAGSEG AASPGSKGPT ALIITVNRVK NLVKEDAEIK SISTEACFAV AKATELFLEG  60
LASKAAAHMQ AAGRADSLEY ADVAAVVAES EALDFLGDVV PQTVKAAALL ASA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848052.11e-73hypothetical protein CHLNCDRAFT_52003
TrEMBLE1ZE113e-72E1ZE11_CHLVA; Uncharacterized protein
STRINGXP_005848052.14e-73(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1085933
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]