PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.1.1011.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13729.6 Da    PI: 10.4159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.1.1011.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.8e-26959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  +ri +++nrqvtf+kR+ng++KKA ELSvLCd ++a++i+ s+ kly yss
  gw1.1.1011.1  9 ERIADERNRQVTFTKRKNGLMKKAMELSVLCDCDIALVIYNSHAKLYQYSS 59
                  699**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-30173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.034161IPR002100Transcription factor, MADS-box
CDDcd002652.06E-33277No hitNo description
PRINTSPR004042.0E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGRKKIKIER IADERNRQVT FTKRKNGLMK KAMELSVLCD CDIALVIYNS HAKLYQYSSG  60
NIEDVLRRFH TDCAEAHEVR NNQDLFDQHF SSQADTSARG KNAASTSKRR GNVWRRVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-35187186MEF2 CHIMERA
6byy_B9e-35187186MEF2 CHIMERA
6byy_C9e-35187186MEF2 CHIMERA
6byy_D9e-35187186MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415963.15e-66predicted protein
SwissprotO550872e-33MEF2B_MOUSE; Myocyte-specific enhancer factor 2B
TrEMBLA4RRU51e-64A4RRU5_OSTLU; Uncharacterized protein
STRINGABO942552e-65(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.29e-26MIKC_MADS family protein