PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.1.1488.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family LSD
Protein Properties Length: 169aa    MW: 17595.9 Da    PI: 8.4983
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.1.1488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.45.5e-14123325
       zf-LSD1  3 gCrtlLsYPrGApsVRCalCdtV 25
                  gC+++L+YP+G+p+VRCalC++V
  gw1.1.1488.1  1 GCGAVLAYPTGSPYVRCALCNHV 23
                  9*********************9 PP
2zf-LSD142.88.8e-143862125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  C+gC +++++Pr+A++VRCalC tV
  gw1.1.1488.1 38 CEGCEVMMRFPRDATHVRCALCETV 62
                  ************************9 PP
3zf-LSD133.85.6e-1184108125
       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                   C gCr +L+Y +G+++VRCa C tV
  gw1.1.1488.1  84 CDGCRSMLAYAAGSTAVRCAACGTV 108
                   ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF069435.7E-10123IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.7E-6124IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.9E-93662IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-93862IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-784108IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-984109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
GCGAVLAYPT GSPYVRCALC NHVTDTRATA TATESMRCEG CEVMMRFPRD ATHVRCALCE  60
TVSVNPRAAA SARHGGRDMA YARCDGCRSM LAYAAGSTAV RCAACGTVTR THSSETPAAA  120
ATSGGDTGRA RVQGARLTRE NLVVIENPPT VTANGKIRSN IAVGVKLDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415612.12e-45predicted protein
TrEMBLA4RRQ73e-44A4RRQ7_OSTLU; Uncharacterized protein
STRINGABO939046e-45(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.61e-23LSD family protein