PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.11.292.1

Common Name

CHLNCDRAFT_14739

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 71aa MW: 7647.53 Da PI: 4.1541

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.11.292.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	40	9.6e-13	12	66	37	91
NF-YB 37 ecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 e fi ++t+ a+d c+ kr+ti++dd+l al +l f + vepl+ l+ r gw1.11.292.1 12 EAGRLFIHYLTATANDACKDAKRQTISADDVLTALEDLDFGELVEPLRSALEGER 66 55567******************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-19	4	63	IPR009072	Histone-fold
Pfam	PF00808	7.5E-8	4	46	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.65E-17	4	64	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
TPLQDALLAC AEAGRLFIHY LTATANDACK DAKRQTISAD DVLTALEDLD FGELVEPLRS 60 ALEGERGGTR E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847430.1	2e-44	hypothetical protein CHLNCDRAFT_14739, partial
TrEMBL	E1ZFS0	5e-43	E1ZFS0_CHLVA; Uncharacterized protein (Fragment)
STRING	XP_005847430.1	8e-44	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-22	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	17354745

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]