PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.11.975.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 105aa MW: 12306.4 Da PI: 9.347

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.11.975.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	162.7	5.2e-51	5	105	2	99
NF-YC 2 lksfwekqiek...atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 l++fw +q+e+ ++dfk h lPlarikki+k+dedv+mis+eaPvl++kace+filelt r+w+ha+e+krrtl +sdiaaa+t+tdifdflvdi gw1.11.975.1 5 LRKFWREQMEEiqaTSDFKTHLLPLARIKKIMKSDEDVRMISSEAPVLFAKACEMFILELTTRAWVHAQESKRRTLLRSDIAAAITKTDIFDFLVDI 101 89****76522278***************************************************************************** PP NF-YC 96 vprd 99 vpr+ gw1.11.975.1 102 VPRE 105 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.59E-31	14	98	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.0E-38	27	104	IPR009072	Histone-fold
Pfam	PF00808	4.1E-23	27	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
QNARLRKFWR EQMEEIQATS DFKTHLLPLA RIKKIMKSDE DVRMISSEAP VLFAKACEMF 60 ILELTTRAWV HAQESKRRTL LRSDIAAAIT KTDIFDFLVD IVPRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-49	12	104	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022839887.1	2e-61	Transcriptional activator NFYC/HAP5 subunit
Swissprot	Q8LCG7	3e-53	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A090N4A5	4e-60	A0A090N4A5_OSTTA; Transcriptional activator NFYC/HAP5 subunit
STRING	A0A090N4A5	6e-61	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2195	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-55	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]