PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.11.979.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 102aa    MW: 12081.8 Da    PI: 10.2966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.11.979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-18348248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + WT+eEd+ lv +++++G ++W+ Ia++m  +R +kqc++r++++l
     gw1.11.979.1  3 QQWTKEEDDELVALIEKYGAKRWSYIASHMR-RRRGKQCRDRYLNHL 48
                     78*****************************.*************97 PP
2Myb_DNA-binding482.9e-155596245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     g W+teE+++l++++k lG++ W++ a+ +  gR ++ +k++w+
     gw1.11.979.1 55 GEWSTEEEQILIEGHKALGTK-WAALAKLLV-GRPENAIKNHWH 96
                     89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.491152IPR017930Myb domain
SMARTSM007172.5E-14150IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-28395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-25455IPR009057Homeodomain-like
CDDcd001674.41E-13548No hitNo description
PfamPF139212.0E-18563No hitNo description
PROSITE profilePS5129416.52853102IPR017930Myb domain
SMARTSM007171.6E-1153101IPR001005SANT/Myb domain
CDDcd001679.80E-85699No hitNo description
Gene3DG3DSA:1.10.10.606.7E-1956101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
FTQQWTKEED DELVALIEKY GAKRWSYIAS HMRRRRGKQC RDRYLNHLRP GIRTGEWSTE  60
EEQILIEGHK ALGTKWAALA KLLVGRPENA IKNHWHATLR CK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3651027104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3651027104C-Myb DNA-Binding Domain
1msf_C2e-3651027104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421720.14e-59predicted protein, partial
SwissprotP102423e-34MYB_HUMAN; Transcriptional activator Myb
TrEMBLA4S8889e-58A4S888_OSTLU; Uncharacterized protein (Fragment)
STRINGABP000142e-58(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-36myb domain protein 98