PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.12.313.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 247aa MW: 26416 Da PI: 10.0091

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.12.313.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.2	1.1e-29	25	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtpeLH++F++av+qLGG e AtPk i+ lm g+tl+h+kSHLQkYRl gw1.12.313.1 25 ARLRWTPELHREFIHAVDQLGGLEIATPKGIMSLMTTAGMTLQHIKSHLQKYRL 78 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-27	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-23	24	79	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.09E-14	24	78	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-6	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	7.8E-12	208	246	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0055063	Biological Process	sulfate ion homeostasis
GO:0071486	Biological Process	cellular response to high light intensity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
KRAKTATASE GSDAAANAPS SRGNARLRWT PELHREFIHA VDQLGGLEIA TPKGIMSLMT 60 TAGMTLQHIK SHLQKYRLQE VPSGKRAEAG TEAARKRRAM IKVARAQQAQ VMKRRASEVD 120 LTLADAAGTG SDEPVTKERL SQLLDKTSSG EGSKPSASQG QLHSMDAILA QALKPDSDPA 180 VAAAAAAVAA ATADTVSDQI IEDMPHVGHA LLKQLEMQKQ LHDQLLAQRR LQSAIEEHGR 240 YLATILA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	23	77	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001420857.1	4e-81	predicted protein
TrEMBL	A4S5Z3	1e-79	A4S5Z3_OSTLU; Uncharacterized protein
STRING	ABO99150	2e-80	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-21	phosphate starvation response 1