PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.13.333.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WOX
Protein Properties Length: 193aa    MW: 21437.7 Da    PI: 7.7243
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.13.333.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.2e-15132193157
                   TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   r +R++ t++  e+Le+lF   ++ p +e+ +e ++ l     ++e++V++WFqNrR +ekk
  gw1.13.333.1 132 RGPRWSGTPKHYEILENLFLAgEQPPVRERLREVTEMLsqhgYIQESNVYNWFQNRRSREKK 193
                   569*****************989999999*********99999******************8 PP
2Wus_type_Homeobox68.98.9e-23133193363
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 
                         +RW+ tp+  +iLe+l+ +G + P +e+++++t++L+++G i++ NV++WFQNr++Re++
       gw1.13.333.1 133 GPRWSGTPKHYEILENLFLAGEQPPVRERLREVTEMLSQHGYIQESNVYNWFQNRRSREKK 193
                        57*********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-12117193IPR009057Homeodomain-like
SuperFamilySSF466898.55E-14127193IPR009057Homeodomain-like
PROSITE profilePS5007113.054129193IPR001356Homeobox domain
CDDcd000863.92E-6132193No hitNo description
PfamPF000461.7E-12132193IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
DDGADGEEGP SVGVVKETMV NPASVVTPDE ATRPPVGAAV HMTERQLYAF RQQIAAYAHI  60
CQQLLQITTV NATQQTDRQR AVRRDVPGTE EMRTTPTPTT AGTGWSGNAG TNAIRIEGGG  120
HRGGRGEDKS QRGPRWSGTP KHYEILENLF LAGEQPPVRE RLREVTEMLS QHGYIQESNV  180
YNWFQNRRSR EKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082606.13e-72Homeobox domain
TrEMBLA0A454XUK56e-71A0A454XUK5_OSTTA; HB2 homeodomain protein
TrEMBLQ00X486e-71Q00X48_OSTTA; Homeobox domain
STRINGQ00X481e-71(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP644567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-17WUSCHEL related homeobox 13