PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.14.301.1
Common NameCOCSUDRAFT_9841
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 62aa    MW: 7195.2 Da    PI: 9.4249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.14.301.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.3e-15226327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  telCr + ++G C+yG++C+FaHg+
  gw1.14.301.1  2 TELCRSWKESGSCRYGSKCQFAHGE 26
                  9**********************96 PP
2zf-CCCH47.43.2e-153862125
                  --S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                  ykte+Cr fa tG C+yG+rC+F+H
  gw1.14.301.1 38 YKTEPCRQFATTGACPYGSRCRFIH 62
                  9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.45E-10131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535127IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-17132IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-12226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-153362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-103462IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-53762IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4363762IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-123862IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
QTELCRSWKE SGSCRYGSKC QFAHGEKELK PVQRHPKYKT EPCRQFATTG ACPYGSRCRF  60
IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A8e-261621172Tristetraproline
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005645348.12e-39hypothetical protein COCSUDRAFT_9841, partial
SwissprotQ5ISE25e-26Z36L3_MOUSE; mRNA decay activator protein ZFP36L3
TrEMBLI0YQY53e-38I0YQY5_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005645348.16e-39(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-25C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]