PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.14.729.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 115aa    MW: 13593.4 Da    PI: 11.4787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.14.729.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-172368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r rW +eEd +l  + +++G++ W++Iar+mg gRt+ qc  rw+ +l
     gw1.14.729.1 23 RERWGEEEDAKLRALQERHGSK-WALIAREMG-GRTDQQCMGRWRRHL 68
                     78********************.*********.************986 PP
2Myb_DNA-binding506.9e-1674115144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rg+W++eEd  l d+ ++lG++ W++I r ++ gRt+ qc+ rw
     gw1.14.729.1  74 RGAWSAEEDVALRDLYNRLGPK-WSLICRSVP-GRTAQQCRARW 115
                      89******************99.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-6128IPR009057Homeodomain-like
PROSITE profilePS512948.075117IPR017930Myb domain
PROSITE profilePS5129425.0621872IPR017930Myb domain
SuperFamilySSF466891.14E-2520115IPR009057Homeodomain-like
SMARTSM007172.3E-152270IPR001005SANT/Myb domain
CDDcd001672.95E-112568No hitNo description
PfamPF139211.1E-172682No hitNo description
Gene3DG3DSA:1.10.10.603.3E-222974IPR009057Homeodomain-like
PROSITE profilePS5129418.40173115IPR017930Myb domain
SMARTSM007171.4E-673115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1775115IPR009057Homeodomain-like
CDDcd001673.56E-976115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGTRTGQQCA QRWRHKVNPN IRRERWGEEE DAKLRALQER HGSKWALIAR EMGGRTDQQC  60
MGRWRRHLDP NVTRGAWSAE EDVALRDLYN RLGPKWSLIC RSVPGRTAQQ CRARW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-2411156151MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-2411156151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421243.13e-62predicted protein
RefseqXP_001421277.11e-62predicted protein, partial
TrEMBLA4S7B66e-61A4S7B6_OSTLU; Uncharacterized protein
TrEMBLA4S7I03e-61A4S7I0_OSTLU; Uncharacterized protein (Fragment)
STRINGABO995361e-61(Ostreococcus 'lucimarinus')
STRINGABO995705e-62(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-26myb domain protein 3r-3