PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.16.195.1
Common NameCHLNCDRAFT_14092
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 78aa    MW: 8517.12 Da    PI: 9.3023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.16.195.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-065875422
                  ---SGGGGTS--TTTTT-S CS
       zf-CCCH  4 elCrffartGtCkyGdrCk 22
                  + C++f+r G+C+ G+ C+
  gw1.16.195.1 58 PVCKRFLR-GYCPAGAACP 75
                  78******.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.197126IPR000571Zinc finger, CCCH-type
SMARTSM003560.99125IPR000571Zinc finger, CCCH-type
SMARTSM003560.112752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9062753IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-54678IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9255478IPR000571Zinc finger, CCCH-type
SMARTSM003560.365478IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-45878IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
KRAVCPHWLH GRCTAGALCT LQHQRKAELM PICTHFLQGR CTAAACPYLH VNLPAGAPVC  60
KRFLRGYCPA GAACPHKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6eoj_B2e-1227864142mRNA 3'-end-processing protein YTH1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845769.13e-50hypothetical protein CHLNCDRAFT_14092, partial
TrEMBLE1ZKC56e-49E1ZKC5_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005845769.11e-49(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]