PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.17.616.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 98aa    MW: 11410.9 Da    PI: 10.476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.17.616.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17242445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     WT+eEd++l  +++++G ++Wk  a+++g ++t+kqc+ r+ 
     gw1.17.616.1  2 WTPEEDDRLRALIERHGARRWKDLAQKLG-NKTAKQCRRRYT 42
                     *****************************.**********96 PP
2Myb_DNA-binding50.35.4e-165393345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      WT+eEde l++a+++lG++ W++Ia+t+g gRt++  k+r+ 
     gw1.17.616.1 53 EWTAEEDEALLRAHEELGNK-WTAIAKTVG-GRTDNGAKNRFK 93
                     6*******************.*********.*****9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.025149IPR017930Myb domain
SuperFamilySSF466897.11E-28192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-18250IPR009057Homeodomain-like
SMARTSM007172.3E-10247IPR001005SANT/Myb domain
PfamPF002491.2E-15242IPR001005SANT/Myb domain
CDDcd001673.21E-12245No hitNo description
PROSITE profilePS5129415.9115098IPR017930Myb domain
SMARTSM007172.3E-105098IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-185198IPR009057Homeodomain-like
PfamPF002491.5E-135393IPR001005SANT/Myb domain
CDDcd001672.19E-85396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MWTPEEDDRL RALIERHGAR RWKDLAQKLG NKTAKQCRRR YTGHLTTALK EHEWTAEEDE  60
ALLRAHEELG NKWTAIAKTV GGRTDNGAKN RFKALMQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2629830126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422172.19e-47predicted protein, partial
TrEMBLA4SA322e-45A4SA32_OSTLU; Uncharacterized protein (Fragment)
STRINGABP004893e-46(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-26myb domain protein r1