PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.18.294.1
Common NameCOCSUDRAFT_9740
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family CPP
Protein Properties Length: 90aa    MW: 9974.41 Da    PI: 8.1094
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.18.294.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR216.6e-071241741
           TCR 17 YCeCfaagkkCseeCkCedCkNkee 41
                  YCeCfa+g++C+  C+C +C+N++e
  gw1.18.294.1  1 YCECFASGRYCDG-CNCVNCCNNKE 24
                  *************.********987 PP
2TCR33.58.3e-116990122
           TCR  1 kekkgCnCkkskClkkYCeCfa 22
                  +++kgCnCkks ClkkYCeCf+
  gw1.18.294.1 69 RHNKGCNCKKSGCLKKYCECFQ 90
                  589******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.11125IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163424.783190IPR005172CRC domain
SMARTSM011140.0476990IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.6E-77290IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
YCECFASGRY CDGCNCVNCC NNKESEQVRQ AAVEAILERN PNAFRPKIQV LEPFCTTGTH  60
VAIQGAAARH NKGCNCKKSG CLKKYCECFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1519025104Protein lin-54 homolog
5fd3_B4e-1519025104Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644154.15e-60hypothetical protein COCSUDRAFT_9740, partial
SwissprotQ9SL702e-32TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLI0YMJ11e-58I0YMJ1_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005644154.12e-59(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.11e-26Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]