PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.19.139.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 169aa MW: 19475.8 Da PI: 8.9691

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.19.139.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	86.4	3.9e-27	1	90	5	103
HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 k+++++ d++++++i w+++g++f v++++ ++++ Lpk FkhsnfaSF+RQLn YgF+k +++ eF + F++gk ell+++kr+ gw1.19.139.1 1 KTWNMVTDDSNDDVIAWNAKGKTFTVYKPDVLEEEYLPKAFKHSNFASFLRQLNNYGFRKCHSDA---------YEFGVQGFERGKPELLTTLKRHD 88 89*********************************************************9998.........78*****************98 PP XX CS HSF_DNA-bind 102 se 103 s+ gw1.19.139.1 89 ST 90 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-26	1	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.7E-27	1	81	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.15E-24	1	86	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-24	1	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-7	36	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-7	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
KTWNMVTDDS NDDVIAWNAK GKTFTVYKPD VLEEEYLPKA FKHSNFASFL RQLNNYGFRK 60 CHSDAYEFGV QGFERGKPEL LTTLKRHDST KGRKGAPRKK TAGGGGGDEL GAYGGIENEV 120 EQLKRDRLLL LKEVMRLRDT QSEQRDRVEE LSNRLEATEN FQTQMRHFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022840597.1	1e-77	Heat shock transcription factor family
TrEMBL	A0A096PA50	3e-76	A0A096PA50_OSTTA; Heat shock transcription factor family
STRING	A0A096PA50	5e-77	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP522	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-33	heat shock transcription factor A1D