PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.19.153.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bHLH
Protein Properties Length: 125aa    MW: 14356.7 Da    PI: 10.3765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.19.153.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10959255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  ++a+  rE+ RRd +Ns++++L  +l       skK + a+ +  A++ Ik+L+
  gw1.19.153.1  9 KKAKRTREKLRRDTLNSRYQQLSAVLELG---ESKKSDQAALVSAATDLIKHLR 59
                  578999**********************8...9*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.344758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-10768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-7972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-8958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-4961No hitNo description
SMARTSM003532.1E-41364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
STALCERVKK AKRTREKLRR DTLNSRYQQL SAVLELGESK KSDQAALVSA ATDLIKHLRA  60
EHARLANTIM RFQDEKLQKA DLLRALAMER EQLVKEKAQL LEEKLHVEGQ LQRFLVSMPF  120
ASPMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422567.12e-43predicted protein
TrEMBLA4SB734e-42A4SB73_OSTLU; Uncharacterized protein
STRINGABP008847e-43(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-13bHLH family protein