PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

gw1.2.161.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Nin-like

Protein Properties

Length: 418aa MW: 45170.5 Da PI: 10.1231

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.2.161.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	6e-26	16	65	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i++e+ls++F+lp ++A+++Lgv+lTvLKr+CR+yGIkRWP+Rk+ksl gw1.2.161.1 16 SDITQEELSSCFHLPSEAACRKLGVGLTVLKRQCRKYGIKRWPFRKMKSL 65 68**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.132	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-19	18	65	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
NQSRENRRVR QYRSASDITQ EELSSCFHLP SEAACRKLGV GLTVLKRQCR KYGIKRWPFR 60 KMKSLDRLIT NVQAGISPGD QSKLMVKSVE ELEEQKRKME ECAVLDLDDT TKRLQQAYSK 120 ANHKARRNRG DATRIRAQAT ANAIRRIERS RGGSFYDPES VSDSLIALQR QLVSDEDGEA 180 SPDGTSEAAT AANTPGGAAS KDGSPAKVLL SNTPVDATFK EEANDDDDAN DTGKKSAKVT 240 SNVMVKRDGA TARDYAETTE KVLTAVKGAW SPARPARRTD AQDDAEAFLS PAGKIRGSPS 300 DRGAGRGRPS ASGDKDGKGG KLPAVSKFKS SAPAVTEDHP AFGLAPAVKG ARSGAQSRLS 360 QVIRNDLQNL LMDRLSKGKN ALCEAFNIDP SDFDRYFNPK LQAASLAGAI EKLATKTS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

NQSRENRRVR QYRSASDITQ EELSSCFHLP SEAACRKLGV GLTVLKRQCR KYGIKRWPFR  60
KMKSLDRLIT NVQAGISPGD QSKLMVKSVE ELEEQKRKME ECAVLDLDDT TKRLQQAYSK  120
ANHKARRNRG DATRIRAQAT ANAIRRIERS RGGSFYDPES VSDSLIALQR QLVSDEDGEA  180
SPDGTSEAAT AANTPGGAAS KDGSPAKVLL SNTPVDATFK EEANDDDDAN DTGKKSAKVT  240
SNVMVKRDGA TARDYAETTE KVLTAVKGAW SPARPARRTD AQDDAEAFLS PAGKIRGSPS  300
DRGAGRGRPS ASGDKDGKGG KLPAVSKFKS SAPAVTEDHP AFGLAPAVKG ARSGAQSRLS  360
QVIRNDLQNL LMDRLSKGKN ALCEAFNIDP SDFDRYFNPK LQAASLAGAI EKLATKTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022840834.1	1e-150	RWP-RK domain
TrEMBL	A0A1Y5I0S6	1e-150	A0A1Y5I0S6_OSTTA; RWP-RK domain-containing protein
STRING	A0A090ME75	1e-150	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-20	RWP-RK domain-containing protein