PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.2.505.1
Common NameCHLNCDRAFT_15459
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family E2F/DP
Protein Properties Length: 83aa    MW: 9295.6 Da    PI: 7.5164
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.2.505.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.81.3e-26280471
      E2F_TDP  4 ksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                 k+Lr+++ k   ++ek+e+ g +t++eva+eL+++              d+kn+rRR+YD+lNVLea+++i+k +k++i+wkg
  gw1.2.505.1  2 KGLRHFSLK---VCEKVESkGDTTYEEVANELIADlaaevaagtveqlhDEKNIRRRVYDALNVLEAIGMINK-NKKAIQWKG 80
                 9********...*****999*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.8E-26180IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-36182IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.63E-22281IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-24280IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
GKGLRHFSLK VCEKVESKGD TTYEEVANEL IADLAAEVAA GTVEQLHDEK NIRRRVYDAL  60
NVLEAIGMIN KNKKAIQWKG WPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-29183991PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851360.13e-55hypothetical protein CHLNCDRAFT_15459, partial
SwissprotQ9FNY27e-30DPB_ARATH; Transcription factor-like protein DPB
TrEMBLE1Z3Z06e-54E1Z3Z0_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005851360.11e-54(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-32Transcription factor DP
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]