PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

gw1.2.725.1

Common Name

COCSUDRAFT_9768

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

CPP

Protein Properties

Length: 81aa MW: 9089.87 Da PI: 8.5598

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.2.725.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	36.4	1.1e-11	1	29	13	41
TCR 13 ClkkYCeCfaagkkCseeCkCedCkNkee 41 Clk+YC+Cfa g +C++ C C+dC+N+++ gw1.2.725.1 1 CLKLYCDCFATGLFCNDACMCKDCENRTD 29 **************************875 PP
2	TCR	33.8	7e-11	60	79	2	21
TCR 2 ekkgCnCkkskClkkYCeCf 21 + kgC C+ks+ClkkYCeCf gw1.2.725.1 60 HVKGCACRKSRCLKKYCECF 79 789***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	23.099	1	81	IPR005172	CRC domain
SMART	SM01114	0.002	1	30	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-8	1	27	IPR005172	CRC domain
SMART	SM01114	0.2	59	80	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.3E-7	62	79	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
CLKLYCDCFA TGLFCNDACM CKDCENRTDT LNAVFKARKF IMVKDPTAFK PKVLDASGGH 60 VKGCACRKSR CLKKYCECFL V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-12	1	79	21	103	Protein lin-54 homolog
5fd3_B	7e-12	1	79	21	103	Protein lin-54 homolog
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005651426.1	4e-52	hypothetical protein COCSUDRAFT_9768, partial
Swissprot	A1Z9E2	5e-23	LIN54_DROME; Protein lin-54 homolog
TrEMBL	I0Z8B3	1e-50	I0Z8B3_COCSC; Uncharacterized protein (Fragment)
STRING	XP_005651426.1	2e-51	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	2e-23	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17044891

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]