PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.2.908.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 273aa    MW: 31047.7 Da    PI: 6.1984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.2.908.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-0796118225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  +t+ Crf+++ G C+ Gd C F H
  gw1.2.908.1  96 GTKVCRFWLQ-GGCRKGDACDFKH 118
                  6899******.************* PP
2zf-CCCH21.83.4e-07127146525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +Crffar G Ck G+rC+F H
  gw1.2.908.1 127 RCRFFAR-GRCKSGSRCPFKH 146
                  7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF104535.4E-61145IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
SMARTSM003562.2E-494120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.86894121IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-596118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-797119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-697119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6124147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016124148IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-5127146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4128150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
ELRPVDPMRL PEDVRKYREE RAKHWPSDRN VRAKLEAGEE ERAREARRRR LREILAKQRE  60
MGHFEASQEI EKDGDGVGEA TTETKNKKDG GGAAVGTKVC RFWLQGGCRK GDACDFKHES  120
APSSDQRCRF FARGRCKSGS RCPFKHELAE KKTSVEGGNP QTLLKKLLDK EIRRDEGRLL  180
QLFRFFVNND FFADTGATTT PWMFPWVDES VKVVDKRSAL ASLPPVDDDA DEDEGKIAAP  240
PREKIAIDAD EDRRERPDMG FFAAYDSDDG PES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840779.11e-116Zinc finger, CCCH-type
TrEMBLA0A090M7R11e-115A0A090M7R1_OSTTA; Zinc finger, CCCH-type
STRINGA0A090M7R11e-116(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.27e-08C3H family protein