PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.20.00.89.1
Common NameOT_ostta20g00800
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 111aa    MW: 12179.1 Da    PI: 8.3635
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.20.00.89.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR475e-15138642
             TCR  6 CnCkkskClkkYCeCfaagkkCsee.CkCedCkNkeek 42
                    CnCk+s+Clk+YCeCfaag+ C++  C+C +C+N+ e+
  gw1.20.00.89.1  1 CNCKNSRCLKLYCECFAAGALCASArCRCANCMNTVEH 38
                    **********************9866********9876 PP
2TCR50.25.1e-1674111138
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
                     ++++gC+Ck+s ClkkYCeCf+a  +C+e+C+C +C+N
  gw1.20.00.89.1  74 RHNRGCHCKRSGCLKKYCECFQAAIYCAETCRCVSCEN 111
                     5899*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163432.4981111IPR005172CRC domain
PfamPF036382.1E-11135IPR005172CRC domain
SMARTSM011144.9E-9138IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011141.7E-1274111IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-1277111IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
CNCKNSRCLK LYCECFAAGA LCASARCRCA NCMNTVEHAG ERTAAIETVL DRNPNAFRPK  60
IAAVASPSRD VALRHNRGCH CKRSGCLKKY CECFQAAIYC AETCRCVSCE N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-29111114120Protein lin-54 homolog
5fd3_B4e-29111114120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840642.14e-75CRC domain
SwissprotQ9SL706e-41TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A096P9E49e-74A0A096P9E4_OSTTA; CRC domain
TrEMBLA0A1Y5I2F02e-70A0A1Y5I2F0_OSTTA; Tesmin/TSO1-like CXC domain-containing protein
STRINGA0A096P9E41e-74(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.13e-43Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]