PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.20.728.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 144aa    MW: 16357.4 Da    PI: 9.3329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.20.728.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-1079128155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   sgy+GV++++   +++A++ +p+    + + +lg f+++++Aa a++ a  + +g
  gw1.20.728.1  79 SGYRGVTRHS-ESKYEARLGVPR----NSHLYLGLFDSPQKAAIAYDTALVQARG 128
                   89*****999.7*********83....5*******************99877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-1679136No hitNo description
SuperFamilySSF541712.68E-1479137IPR016177DNA-binding domain
SMARTSM003801.7E-2080142IPR001471AP2/ERF domain
PROSITE profilePS5103215.13280136IPR001471AP2/ERF domain
PRINTSPR003674.1E-68192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1581137IPR001471AP2/ERF domain
PRINTSPR003674.1E-6118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
RQVYLGGHVE EEFAAEAFDI IVLKLSRMGD RSRTGSRPLK MNFPESRYAD LIDFIDSLTL  60
DELIMEVRRH SEGFARGASG YRGVTRHSES KYEARLGVPR NSHLYLGLFD SPQKAAIAYD  120
TALVQARGRR ASTNFPLHNY NNHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422573.14e-85predicted protein, partial
RefseqXP_003083036.12e-83DNA-binding domain
TrEMBLA0A2D8AM961e-99A0A2D8AM96_9EURY; Uncharacterized protein
STRINGABP008901e-84(Ostreococcus 'lucimarinus')
STRINGQ00VW78e-83(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-25AP2 family protein