PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.20.85.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YC
Protein Properties Length: 565aa    MW: 61680.1 Da    PI: 6.8564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.20.85.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC537.4e-174004811596
        NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                  d  ++ lP+ar+k+i+k d++vk+ s++a   +ska elf+  l++ s    + +kr+ ++  d++a v r  +++fl d+v
  gw1.20.85.1 400 DASDTVLPVARVKRIIKLDKEVKQASSDAIKCVSKAVELFLEGLAVGSHAAMRAAKRKGVQYKDLEAFVLRRGKYEFLHDHV 481
                  677899**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038761.5E-1211112IPR005576RNA polymerase Rpb7, N-terminal
SuperFamilySSF470958.38E-6288340IPR009071High mobility group box domain
CDDcd013907.14E-8289341No hitNo description
SuperFamilySSF471131.1E-14390482IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.4E-18406481IPR009072Histone-fold
PfamPF008088.7E-12406465IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
ASCVVSRDAV FTVAVHPSAL RDPLRGARAV LDAAAMRHCD ALGGVLMSYA DARLAGTTGR  60
ETEGDATTSD SSESSSCSEA STSDEESAIG FGRVLHASGH VDVCVRARCE VFMPVRGSRL  120
VGTVNKVAHD FIGALVLDTF NVAIAAENIR EELVSSVDET GCWKSAWDDE HVIRVGSQIV  180
FTVKNVTESD NVVLLSGEMR DQATGERGYV ARSSSGLTSI ERKLVADARE KKEKKEKKEK  240
KKKKEKKEKK EKKEKKEKKR ERASGEDETA KSKPAPPLPS SRSVDMAFPK KLSAYMTFSN  300
ANRERVRDEL IASGHDKPTI ADIARAISVE WNAKTDEEKA VRAMRCPRRR TRDSTRAIAQ  360
ATERAYETAV AEAIARGETP DEKPPDGGRV DGGVDVGRAD ASDTVLPVAR VKRIIKLDKE  420
VKQASSDAIK CVSKAVELFL EGLAVGSHAA MRAAKRKGVQ YKDLEAFVLR RGKYEFLHDH  480
VWAMRPREGE KGDGDDEDED DADGGESVKK RKEVTDANGS MRVTDFFTPG ESPKKRPRAE  540
TETETETETA NGGDTPTVIP ETEVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_B1e-124044791388Putative transcription factor C16C4.22
5y27_B1e-124044791388Putative transcription factor C16C4.22
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239249KKKKKEKKEKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y5I9321e-160A0A1Y5I932_OSTTA; DNA polymerase epsilon, subunit C
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP261633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-09nuclear factor Y, subunit C10