PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

gw1.23.191.1

Common Name

COCSUDRAFT_9572

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 92aa MW: 10969.5 Da PI: 8.4904

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.23.191.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	34	55	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C+++ r G+C G+ C++aHg gw1.23.191.1 34 EPCPDYKR-GICLLGSACPYAHG 55 89****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	5.49E-6	30	60	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	30	56	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	30	57	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-6	33	58	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	34	55	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4	65	88	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
CPMKHTHPWE ECCYAHPHEN ARRRDPRKYQ YVAEPCPDYK RGICLLGSAC PYAHGVYERN 60 LHPSKYRTQM CTETGHCSRK VCFFAHETWQ LR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643022.1	5e-64	hypothetical protein COCSUDRAFT_9572, partial
Swissprot	Q10EL1	3e-34	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	I0YJA9	1e-62	I0YJA9_COCSC; Uncharacterized protein (Fragment)
STRING	XP_005643022.1	2e-63	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	2e-36	C3H family protein

Link Out ? help Back to Top
Entrez Gene	17036535

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]