PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.24.267.1

Common Name

CHLNCDRAFT_15492

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 93aa MW: 11056.5 Da PI: 8.9936

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.24.267.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.7	1.8e-33	3	93	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++++ + +isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll +i+ gw1.24.267.1 3 FLTKTYELVDEAISDPIISWGADGQSFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFLRGRRDLLGDIH 90 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k gw1.24.267.1 91 RRK 93 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.03E-34	1	92	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-36	1	92	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.6E-56	1	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-30	3	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-19	3	26	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-19	41	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	42	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
PPFLTKTYEL VDEAISDPII SWGADGQSFV VWKPAEFARD LLPLHFKHNN FSSFVRQLNT 60 YGFRKVDPDR WEFANEYFLR GRRDLLGDIH RRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	4e-25	1	92	5	106	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	4e-25	1	92	5	106	HEAT-SHOCK TRANSCRIPTION FACTOR
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844236.1	9e-64	hypothetical protein CHLNCDRAFT_15492, partial
Swissprot	Q6Z9C8	2e-45	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	E1ZPW2	2e-62	E1ZPW2_CHLVA; Uncharacterized protein (Fragment)
STRING	XP_005844236.1	3e-63	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP522	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	2e-47	heat shock transcription factor A1D

Link Out ? help Back to Top
Entrez Gene	17351514

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]