PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.28.76.1
Common NameCHLNCDRAFT_14655
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB
Protein Properties Length: 82aa    MW: 9425.54 Da    PI: 9.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.28.76.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13142245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     g WT eEd ll+    + G++ W+ +ar+++ g+t+ qc  rw+
      gw1.28.76.1  1 GVWTDEEDALLALWQGRVGNK-WSEVARHIP-GKTGQQCAQRWR 42
                     68*******************.*********.***********8 PP
2Myb_DNA-binding33.41e-105181132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     r +W++eEd +l+ +v ++G+  W+ I+r+++
      gw1.28.76.1 51 REKWSAEEDARLALLVDKHGNS-WAEISRRLP 81
                     789*****************99.********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-8147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-19153IPR009057Homeodomain-like
PROSITE profilePS5129420.587149IPR017930Myb domain
SuperFamilySSF466891.04E-18282IPR009057Homeodomain-like
CDDcd001675.66E-8342No hitNo description
PfamPF139211.5E-17362No hitNo description
SMARTSM007173.45081IPR001005SANT/Myb domain
PROSITE profilePS5129411.9955082IPR017930Myb domain
CDDcd001675.87E-55382No hitNo description
Gene3DG3DSA:1.10.10.609.7E-125482IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
GVWTDEEDAL LALWQGRVGN KWSEVARHIP GKTGQQCAQR WRHRVNPNIS REKWSAEEDA  60
RLALLVDKHG NSWAEISRRL PG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-16182587MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-16182587C-Myb DNA-Binding Domain
1msf_C3e-16182587C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843700.11e-53hypothetical protein CHLNCDRAFT_14655, partial
TrEMBLE1ZRB43e-52E1ZRB4_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005843700.15e-53(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-21myb domain protein 98
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]