PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.29.136.1

Common Name

CHLNCDRAFT_13521

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 164aa MW: 16952 Da PI: 7.1322

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.29.136.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.3	4.6e-12	4	28	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP+GA +VRCa C tV gw1.29.136.1 4 CAGCRTVLLYPAGAQNVRCARCSTV 28 ***********************98 PP
2	zf-LSD1	31.8	2.4e-10	45	69	1	23
zf-LSD1 1 Cg..gCrtlLsYPrGApsVRCalCd 23 C+ +Cr++L+YPrGA +V+C++C gw1.29.136.1 45 CSnaQCRVVLMYPRGAGAVQCSVCG 69 55669*******************6 PP
3	zf-LSD1	41	3.2e-13	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+++L+Y +GA sV+Ca+C++V gw1.29.136.1 85 CGGCQVTLAYAYGAQSVKCAVCNFV 109 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.9E-13	1	31	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-10	4	28	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.9E-6	43	69	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.7E-10	45	70	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.30.40.10	9.1E-4	63	112	IPR013083	Zinc finger, RING/FYVE/PHD-type
TIGRFAMs	TIGR01053	6.8E-10	82	110	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.4E-11	85	109	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
QIVCAGCRTV LLYPAGAQNV RCARCSTVTA VAPPTPAADM AQLCCSNAQC RVVLMYPRGA 60 GAVQCSVCGN ISDASQANQL GHVVCGGCQV TLAYAYGAQS VKCAVCNFVT PVSAHLGGTS 120 TAAQQQPQQQ SAQQQGQQQQ QQQHQAATVV VENPATQDEQ GNEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843568.1	1e-111	hypothetical protein CHLNCDRAFT_13521, partial
TrEMBL	E1ZRS9	1e-110	E1ZRS9_CHLVA; Uncharacterized protein (Fragment)
STRING	XP_005843568.1	1e-110	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4613	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	7e-31	lsd one like 1

Link Out ? help Back to Top
Entrez Gene	17350959

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]