PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.3.668.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 71aa    MW: 8211.4 Da    PI: 8.7687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.3.668.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.51.4e-15934126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 yktelCr + ++G C+yG++C+FaHg
  gw1.3.668.1  9 YKTELCRSWEESGACRYGAKCQFAHG 34
                 9************************8 PP
2zf-CCCH37.44.2e-124771125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 ykte Cr+fa+ G C+yG+rC+F+H
  gw1.3.668.1 47 YKTEVCRTFAAQGCCPYGSRCRFIH 71
                 9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.5E-20441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-11540IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91836IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12934IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-144271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-94371IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-44671IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5724671IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-94771IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
SPKQQHSLYK TELCRSWEES GACRYGAKCQ FAHGCDELRP VLRHPKYKTE VCRTFAAQGC  60
CPYGSRCRFI H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A7e-29771872Tristetraproline
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416952.15e-44predicted protein, partial
RefseqXP_022838502.16e-44Zinc finger, CCCH-type
SwissprotP479806e-28TIS11_DROME; Protein TIS11
TrEMBLA0A1Y5IA537e-43A0A1Y5IA53_OSTTA; CCCH-type Zn-finger protein
STRINGABO952452e-43(Ostreococcus 'lucimarinus')
STRINGA0A090LYN42e-43(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-28C3H family protein